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21 to 30 of 6,148 Results
application/vnd.realvnc.bed - 273.1 KB - MD5: 55537462d13a7b63478a5c86bacd3c85
C.elegans canonical TE annotation file. Extracted from the draft TE annotation (bed format) using REPETpostAnal- V1.0.5.py
text/x-r-markdown - 11.9 KB - MD5: 236dfebefc66360f002ab9f2be41c81a
bidule
Plain Text - 42.4 KB - MD5: 5454e03b83348b10825a16f245e3b049
Per-TE-consensus statistics e.g number of copies, TE class and order, copies length/identity statistics, etc. Tab separated file.
Plain Text - 431.5 KB - MD5: 7c3b2bb25f672aaded0f0d3779368050
Per-TE-copy statistics e.g linked TE-consenus, copies length/identity statistics, etc. Tab separated file.
Plain Text - 11.2 KB - MD5: 226b7da76ef131548400c2156720d4b5
Logs from C. elegans TE annotation post-processing using REPETpostAnal program. Summarize annotations statistics for each post-processing steps.
text/x-python - 29.5 KB - MD5: a7a5d1e82e1ba7c3f5730ebd8ce5ea7a
In-house python (>= 3) script. Used to parse REPET draft annotation (repeatome) and isolate canonical TE annotations.Requires as input i) REPET draft TE-annotation output (.gff3), ii) the TE-consensus library used for the annotation, iii) the genome fasta file. Default parameters...
Unknown - 1.2 KB - MD5: 7dc495225549030ba39b271c079d7f22
TE annot pipeline configuration file with parameters values. Mandatory for TEdenovo pipeline execution. For more information, see : https://urgi.versailles.inra.fr/Tools/REPET https://urgi.versailles.inra.fr/Tools/REPET/TEannottuto
Unknown - 2.4 KB - MD5: 0f0907566230d6ad307cec197a96ab40
TE denovo pipeline configuration file with parameters values. Mandatory for TEdenovo pipeline execution. For more information, see : https://urgi.versailles.inra.fr/Tools/REPET https://urgi.versailles.inra.fr/Tools/REPET/TEdenovotuto
Plain Text - 11.2 KB - MD5: 7f420c02b5e039d16790c59e74f07dec
Logs from M. incognita TE annotation post-processing. Summarize annotations statistics for each post-processing steps.
text/x-python - 29.5 KB - MD5: a7a5d1e82e1ba7c3f5730ebd8ce5ea7a
In-house python (>= 3) script. Used to parse REPET draft annotation (repeatome) and isolate canonical TE annotations.Requires as input i) REPET draft TE-annotation output (.gff3), ii) the TE-consensus library used for the annotation, iii) the genome fasta file. Default parameters...
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