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1 to 10 of 82 Results
Aug 7, 2020 - PMB Metabolomics
Deborde, Catherine, 2020, "Sunflower xylem sap NMR-based Metabolomics - Low [Cd] exposition", https://doi.org/10.15454/WEIXCP, Portail Data INRAE, V2, UNF:6:SOmZDpj3dVza5NuskRNxzA== [fileUNF]
1D 1H-NMR metabolomic profiling of xylem sap in two sunflower cultivars exposed to low Cd concentrations in hydroponics.
Aug 5, 2020
Ehrenmann, Francois; Plomion, Christophe, 2020, "Oak Genome Sequencing Website", https://doi.org/10.15454/WSMRIN, Portail Data INRAE, V2
The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource by INRAE, available at http://www.oakgenome.fr/. It provides access to various resources : oak genome b...
Jul 30, 2020
Le Dantec, Loick; Girollet, Nabil; Jérôme, Gouzy; Erika, Sallet; Sébastien, Carrère; Mathieu, Fouché; Jose Quero-Garcia; Elisabeth, Dirlewanger, 2020, "Assembly and annotation of 'Regina' sweet cherry genome", https://doi.org/10.15454/KEW474, Portail Data INRAE, V1
This dataset includes the preliminary assembly and structural annotation of the version 1 (V1) of 'Regina' sweet cherry genome, following genome sequencing using PacBio long reads and optical mapping. We have reconstructed the pseudomolecules at near chromosome level using high d...
Jul 24, 2020 - SPOmics
Monachello, Dario; Lurin,Claire; Vert, Gregory, 2020, "InterATOME protein-protein interactions from Vert, Gregory (Lysine-63 Polyubiquitin Networks)", https://doi.org/10.15454/ZKPXKS, Portail Data INRAE, V2
This dataset provides the results of two systematic large-scale yeast two-hybrid screenings of the Arabidopsis thaliana InterATOME library with the Arabidopsis Ubiquitin-conjugating enzymes-E2s (UBC35/36-UEV1A/B/C/D) and their –interacting Ub-ligases E3s.
Jul 22, 2020 - SPOmics
Monachello, Dario; Lurin, Claire, 2020, "InterATOME protein-protein interactions, Public", https://doi.org/10.15454/5I2RO1, Portail Data INRAE, V1
This dataset provides the results of many systematic large-scale yeast two-hybrid mappings of the Arabidopsis thaliana protein interactome
Jul 20, 2020 - SPOmics
Monachello, Dario; Lurin, Claire; Peeters, Nemo; Noel, Laurent, 2020, "InterATOME protein-protein interactions from Peeters and Noel projects (EffectorK)", https://doi.org/10.15454/X5JNQY, Portail Data INRAE, V1
This dataset provides the results of a systematic large-scale yeast two-hybrid screening of the Arabidopsis thaliana InterATOME library with effector proteins from two vascular bacterial pathogens: Ralstonia pseudosolanacearum and Xanthomonas campestris.
Jul 16, 2020 - Omics Dataverse
Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts to analyze metabarcoding data of fungal communities", https://doi.org/10.15454/0CNFWS, Portail Data INRAE, V1, UNF:6:AbAHJCHSVEP+kwY2z9TN7A== [fileUNF]
This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al., Maternal effects shape seed fungal communities in Quercus petraea. Submitted). The bioinformatic script was applied to raw sequences after paired-end sequences were j...
Jul 15, 2020 - Experimental - Observation - Simulation Dataverse
Bénard, Camille; Biais, Benoit; Ballias, Patricia; Beauvoit, Bertrand; Bernillon, Stéphane; Cabasson, Cécile; Colombié, Sophie; Deborde, Catherine; Gaillard, Pierre; Génard, Michel; Gibon, Yves; Jacob, Daniel; Maucourt, Mickael; Moing, Annick; Vercambre, Gilles, 2018, "FRIM - Fruit Integrative Modelling", https://doi.org/10.15454/95JUTK, Portail Data INRAE, V5
The project aimed to build a virtual tomato fruit that enables the prediction of metabolite levels given genetic and environmental inputs, by an iterative process between laboratories which combine expertise in fruit biology, ecophysiology, theoretical and experimental biochemist...
Jul 7, 2020
Ma, Yuxin, 2020, "Bioinformatic and statistical scripts to analyze the leaf-associated fungal community of wild plant populations", https://doi.org/10.15454/JQPBOW, Portail Data INRAE, V2, UNF:6:+Ms4XeqLMk3Aqhstq1K0Wg== [fileUNF]
This dataset contains R-scripts to perform bioinformatic and statistical analysis on leaf-associated fungal communities of wild plant populations (Ma et al. Leaf-associated fungal and viral communities of wild plant populations differ between cultivated and natural ecosystems. Su...
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "TE polymorphisms detection and analysis with PopoolationTE2", https://doi.org/10.15454/EWJCT8, Portail Data INRAE, V2
Summary: contains the i) popoolationTE2 workflow used to detect polymorphism across M. incognita's isolates and evaluate the tool error rate, ii) the popoolationTE2 output file containing all the potential TE polymorphisms, iii) the global analysis workflow.
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