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1 to 10 of 76 Results
May 29, 2020 - Experimental - Observation - Simulation Dataverse
Bénard, Camille; Biais, Benoit; Ballias, Patricia; Beauvoit, Bertrand; Bernillon, Stéphane; Cabasson, Cécile; Colombié, Sophie; Deborde, Catherine; Gaillard, Pierre; Génard, Michel; Gibon, Yves; Jacob, Daniel; Maucourt, Mickael; Moing, Annick; Vercambre, Gilles, 2018, "FRIM - Fruit Integrative Modelling", https://doi.org/10.15454/95JUTK, Portail Data INRAE, V4
The project aimed to build a virtual tomato fruit that enables the prediction of metabolite levels given genetic and environmental inputs, by an iterative process between laboratories which combine expertise in fruit biology, ecophysiology, theoretical and experimental biochemist...
May 29, 2020
Laguerre, Sandrine, 2020, "MINTIA paper Biological samples", https://doi.org/10.15454/AH8CRS, Portail Data INRAE, V1
Reads corresponding to the biological samples initially analysed in "Investigating Host Microbiota Relationships Through Functional Metagenomics" of Laville et al and used to validate MINTIA pipeline on biological samples. The assembled and annotated fosmids of Laville et al are...
May 25, 2020
Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, David; Pfannkuchen, Martin; Trobajo, Rosa; Vasselon, Valentin; Wetzel, Carlos; Zimmermann, Jonas; Bouchez, Agnès, 2018, "Diat.barcode, an open-access barcode library for diatoms", https://doi.org/10.15454/TOMBYZ, Portail Data INRAE, V7
Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They display a huge diversity, which makes them excellent ecological indicators of aquatic ecosystems, and...
May 18, 2020 - SPOmics
Delannoy, Etienne; Jakalski, Marcin, 2020, "The genomic impact of mycoheterotrophy: targeted gene losses but extensive expression reprogramming", https://doi.org/10.15454/HR9KUX, Portail Data INRAE, V1, UNF:6:jY13iPp6Ar4xBi23WIDSwA== [fileUNF]
this dataset provides the results of the de novo assembly and annotation of RNA-seq data from the mycoheterotrophic orchids Neottia nidus-avis and Epipogium aphyllum. For each species, a gff file, an annotation file and an expression count table is provided. The raw sequencing da...
May 14, 2020
Dérozier, Sandra; Nicolas, Pierre; Mäder, Ulrike; Guérin, Cyprien, 2020, "Genoscapist", https://doi.org/10.15454/OMDLOD, Portail Data INRAE, V1
Genoscapist is a web-tool generating high-quality images for interactive visualization of hundreds of quantitative profiles along a reference genome together with various annotations.
May 12, 2020
Rocha Tartaglia, Natayme, 2020, "Extracellular vesicles produced by human and animal Staphylococcus aureus strains share a highly conserved core proteome", https://doi.org/10.15454/SMFFWK, Portail Data INRAE, V1
The Extracellular Vesicle (EV) proteomes of five Staphylococcus aureus (S. aureus) strains originating from human, bovine, and ovine hosts were characterised thanks to proteomics. EVs were purified from supernatants of early stationary S. aureus cultures by a sucrose density grad...
May 5, 2020
Montarry, Josselin, 2020, "Hatching-data_Gautier-et-al_FIM", https://doi.org/10.15454/THNCAC, Portail Data INRAE, V1, UNF:6:Qx5HAPMFz/q1+QdYIuPKWA== [fileUNF]
Hatching rates of Globodera pallida in native and recolonized soils (A, D, F and J) for each replicate in each modality (dose 1, dose 2 and control).
May 4, 2020
Jardin, Julien, 2020, "Data from: Extracellular vesicles produced by the probiotic Propionibacterium freudenreichii CIRM-BIA 129 mitigate inflammation by modulating the NF-κB pathway", https://doi.org/10.15454/Q6PPXY, Portail Data INRAE, V1
Extracellular vesicles (EVs) are nanometric spherical structures implicated in intercellular communication, whose occurrence is considered a general occurring-phenomenon in living organisms. Bacterial EVs have been associated to several processes, including survival, competition,...
Apr 10, 2020
Ehrenmann, Francois; Truffaut, Laura; Kremer, Antoine, 2020, "Oak Genome Sequencing Website", https://doi.org/10.15454/WSMRIN, Portail Data INRAE, V1
The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource by INRAE, available at http://www.oakgenome.fr/. It provides access to various resources : oak genome b...
Mar 17, 2020 - Omics Dataverse
Nikolic, Natacha; Thompson, Paul; de Bruyn, Mark; Macé, Matthias; Chevalet, Claude, 2020, "Microsatellite data from: Evolutionary history of a Scottish harbour seal population", https://doi.org/10.15454/AOZ7JI, Portail Data INRAE, V2
A total of 93 harbour seal samples from Moray Firth (North East Scotland ) were genotyped with 25 microsatellite markers using fluorescent labelled primers (see Appendix A, B from Nikolic et al. 2020). PCR amplification was carried out using Applied Biosystems 2720 Thermal Cycler...
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