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1 to 10 of 24 Results
Nov 8, 2018 - Grapevine Downy Mildew Genomics Dataverse
Dussert, Yann; Couture, Carole; Mazet, Isabelle D.; Gouzy, Jérôme; Piron, Marie-Christine; Rispe, Claude; Mestre, Pere; Delmotte, François, 2018, "Genome assembly and annotation of Plasmopara muralis, the downy mildew pathogen on Parthenocissus tricuspidata and Parthenocissus quinquefolia", https://doi.org/10.15454/Q1QJYK, Portail Data Inra, V2
This dataset includes the assembly and annotation of the Plasmopara muralis genome (INRA-PM001 isolate). Plasmopara muralis is the causal agent of downy mildew on Parthenocissus tricuspidata and Parthenocissus quinquefolia. Archives can contain README files with important informa...
Oct 19, 2018 - URGI Plant and Fungi Dataverse
URGI, 2018, "Transposable element annotation of Botrytis cinerea B05.10", https://doi.org/10.15454/TFYH9N, Portail Data Inra, V1
The TEdenovo was launched on Botrytis cinerea strain B05.10 whole genome (18 chromosomes, NCBI bioProject PRJNA264284, assembly ASM83294v1). The TE Consensus library from the TEdenovo (36 consensus) was filtered out for consensus sequences classified as SSR, or noCat built from l...
Oct 16, 2018 - BioForA Dataverse
Rogier, Odile; Chateigner, Aurélien; Amanzougarene, Souhila; Lesage-Descauses, Marie-Claude; Balzergue, Sandrine; Brunaud, Véronique; Caius, José; Soubigou-Taconnat, Ludivine; Jorge, Véronique; Segura, Vincent, 2018, "Data from: Accuracy of RNAseq based SNP discovery and genotyping in Populus nigra", https://doi.org/10.15454/KZOPZB, Portail Data Inra, V1
This dataset includes analysis files for the paper "Accuracy of RNAseq based SNP discovery and genotyping in Populus nigra"
Oct 8, 2018 - Experimental - Observation - Simulation Dataverse
Bénard, Camille; Bernillon, Stéphane; Biais, Benoit; Maucourt, Mickael ; Ballias, Patricia; Deborde, Catherine; Colombié, Sophie; Cabasson, Cécile; Jacob, Daniel; Gibon, Yves; Moing, Annick, 2018, "FRIM - Fruit Integrative Modelling", https://doi.org/10.15454/95JUTK, Portail Data Inra, V1
The project aimed to build a virtual tomato fruit that enables the prediction of metabolite levels given genetic and environmental inputs, by an iterative process between laboratories which combine expertise in fruit biology, ecophysiology, theoretical and experimental biochemist...
Oct 4, 2018 - URGI Plant and Fungi Dataverse
Quesneville, Hadi, 2018, "Transposable element annotation of Arabidopsis lyrata subsp. lyrata", https://doi.org/10.15454/INYUVZ, Portail Data Inra, V1
After running the TEdenovo, we got a filtered library (without the SSR consensus and without the unclassified consensus if they were generated with less than 10 HSPs). We have clustered this library and the cluster number is in the header of each consensus. After a first TEannot...
Oct 3, 2018
Mondy, Samuel, 2018, "GenoSol platform : A Logistic and Technical Platform for Conserving and Exploring Soil Microbial Diversity.", https://doi.org/10.15454/L7QN45, Portail Data Inra, V1
The platform "GenoSol" was created by the UMR1347 AGROECOLOGIE at the INRA (French National Institute for Agronomic Research) of Dijon. This platform aimed to provide a logistics and technical structure dedicated to the acquisition, conservation, characterization and supply of ge...
Sep 26, 2018 - Omics Dataverse
Deborde, Catherine; Fontaine, Jean-Xavier; Molinié, Roland; Botana, Adolfo; Jacob, Daniel, 2018, "1D 1H-NMR profiling of wheat samples", https://doi.org/10.15454/ERCVZR, Portail Data Inra, V1
NMR metabolomic profiling of wheat samples recorded on three sites (JEOL400, Bruker 500 and Bruker 600 MHz) - To be used with NMRProcFlow (https://nmrprocflow.org)
Aug 18, 2018 - Omics Dataverse
Eder, Matthias; Nidelet, Thibault; Sanchez, Isabelle; Camarasa, Carole; Legras, Jean-Luc; Dequin, Sylvie, 2018, "QTL mapping of modeled metabolic fluxes reveals gene variants impacting yeast central carbon metabolism", https://doi.org/10.15454/C1F8MO, Portail Data Inra, V1, UNF:6:1GNQbdUMJsdTEnbedU3lUQ==
The yeast Saccharomyces cerevisiae is an attractive industrial host for the production of a wide range of bulk and fine chemicals, such as biofuels, flavors and fragrances or pharmaceutical products. The intermediates of yeast central carbon metabolism (CCM) are the building bloc...
Aug 10, 2018
Vasselon, Valentin; Rimet, Frederic; Bouchez, Agnès, 2018, "Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcoding (version v7: 23-02-2018)", https://doi.org/10.15454/HYRVUH, Portail Data Inra, V1
Method followed to obtain the Rsyst::diatom_rbcl_align_312bp database: 1/ Extraction of the 312bp rbcL barcode from the full Rsyst::diatom database rbcL alignment (using Diat_rbcL_108F and R3 primers). 2/ Sequences with ambiguities (N), homopolymers > 8 and length < 312bp are rem...
Aug 7, 2018 - Omics Dataverse
Pauvert, Charlie; Buee, Marc; Laval, Valérie; Edel-Hermann, Véronique; Fauchery, Laure; Gautier, Angélique; Lesur Kupin, Isabelle; Vallance, Jessica; Vacher, Corinne, 2018, "Bioinformatic scripts allowing the comparison of fungal metabarcoding pipelines", https://doi.org/10.15454/VKTWKR, Portail Data Inra, V2
This dataset contains scripts and code that can be used to compare metabarcoding pipelines using a fungal mock community. These bioinformatics scripts were applied to the sequences available at https://doi.org/10.15454/8CVWRR (Pauvert et al. ITS all fun guys: a comparison of bioi...
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