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1 to 10 of 20 Results
Nov 8, 2018 - Grapevine Downy Mildew Genomics Dataverse
Dussert, Yann; Couture, Carole; Mazet, Isabelle D.; Gouzy, Jérôme; Piron, Marie-Christine; Rispe, Claude; Mestre, Pere; Delmotte, François, 2018, "Genome assembly and annotation of Plasmopara muralis, the downy mildew pathogen on Parthenocissus tricuspidata and Parthenocissus quinquefolia", https://doi.org/10.15454/Q1QJYK, Portail Data Inra, V2
This dataset includes the assembly and annotation of the Plasmopara muralis genome (INRA-PM001 isolate). Plasmopara muralis is the causal agent of downy mildew on Parthenocissus tricuspidata and Parthenocissus quinquefolia. Archives can contain README files with important informa...
Oct 3, 2018
Mondy, Samuel, 2018, "GenoSol platform : A Logistic and Technical Platform for Conserving and Exploring Soil Microbial Diversity.", https://doi.org/10.15454/L7QN45, Portail Data Inra, V1
The platform "GenoSol" was created by the UMR1347 AGROECOLOGIE at the INRA (French National Institute for Agronomic Research) of Dijon. This platform aimed to provide a logistics and technical structure dedicated to the acquisition, conservation, characterization and supply of ge...
Sep 25, 2018
Fabre, Frederic, 2018, "Data for Evolution of pathogen traits in response to quantitative host resistance in heterogeneous environments by R. Djidjou-Demasse, S. Lion, A. Ducrot, J.-B. Burie and F. Fabre", https://doi.org/10.15454/WAEIMA, Portail Data Inra, V1, UNF:6:VMSNwYEeJZ3ImK9r2Mlkig==
MATLAB and R codes for reproducing the simulations and main figures, described in the paper: Djidjou-Demasse et al. 2018 Evolution of pathogen traits in response to quantitative host resistance in heterogeneous environments
Sep 25, 2018
Mougin, Christian, 2018, "Biochem-Env: a platform of biochemistry for research in environmental and agricultural sciences", https://doi.org/10.15454/HA6V6Y, Portail Data Inra, V1
Biochemical indicators are potent tools to assess ecosystem functioning under anthropic and global pressures. Nevertheless, additional work is needed to improve the methods used for the measurement of these indicators, and for a more relevant interpretation of the obtained result...
Aug 18, 2018 - Omics Dataverse
Eder, Matthias; Nidelet, Thibault; Sanchez, Isabelle; Camarasa, Carole; Legras, Jean-Luc; Dequin, Sylvie, 2018, "QTL mapping of modeled metabolic fluxes reveals gene variants impacting yeast central carbon metabolism", https://doi.org/10.15454/C1F8MO, Portail Data Inra, V1, UNF:6:1GNQbdUMJsdTEnbedU3lUQ==
The yeast Saccharomyces cerevisiae is an attractive industrial host for the production of a wide range of bulk and fine chemicals, such as biofuels, flavors and fragrances or pharmaceutical products. The intermediates of yeast central carbon metabolism (CCM) are the building bloc...
Aug 10, 2018
Vasselon, Valentin; Rimet, Frederic; Bouchez, Agnès, 2018, "Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcoding (version v7: 23-02-2018)", https://doi.org/10.15454/HYRVUH, Portail Data Inra, V1
Method followed to obtain the Rsyst::diatom_rbcl_align_312bp database: 1/ Extraction of the 312bp rbcL barcode from the full Rsyst::diatom database rbcL alignment (using Diat_rbcL_108F and R3 primers). 2/ Sequences with ambiguities (N), homopolymers > 8 and length < 312bp are rem...
Aug 7, 2018 - Omics Dataverse
Pauvert, Charlie; Buee, Marc; Laval, Valérie; Edel-Hermann, Véronique; Fauchery, Laure; Gautier, Angélique; Lesur Kupin, Isabelle; Vallance, Jessica; Vacher, Corinne, 2018, "Bioinformatic scripts allowing the comparison of fungal metabarcoding pipelines", https://doi.org/10.15454/VKTWKR, Portail Data Inra, V2
This dataset contains scripts and code that can be used to compare metabarcoding pipelines using a fungal mock community. These bioinformatics scripts were applied to the sequences available at https://doi.org/10.15454/8CVWRR (Pauvert et al. ITS all fun guys: a comparison of bioi...
Aug 3, 2018 - Omics Dataverse
Pauvert, Charlie; Buée, Marc; Laval, Valérie; Edel-Hermann, Véronique; Fauchery, Laure; Gautier, Angélique; Lesur Kupin, Isabelle; Vallance, Jessica; Vacher, Corinne, 2018, "DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils.", https://doi.org/10.15454/8CVWRR, Portail Data Inra, V1
This sequence dataset (FASTQ format) was obtained by metabarcoding an artificial (mock) fungal community. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platform (v3 chemistry, 2x250 bp)...
Jul 19, 2018
Chaumeil, Philippe; Fischer-Le Saux, Marion; Frigerio, Jean-Marc; Grenier, Eric; Rimet, Frédéric; Streito, Jean-Claude; Laval, Valérie; Franc, Alain, 2018, "R-Syst: a network providing curated molecular databases and data analysis tools for taxonomy and systematics (Prokaryotes and Eucaryotes)", https://doi.org/10.15454/OEDAUS, Portail Data Inra, V1
R-Syst network deals about systematic and (meta) barcoding and provide curated molecular databases for species identification and provide tools for diagnosis and inventories. The stakes are at the same time a precise diagnosis of organisms of interest (for example pathogens detec...
Jul 18, 2018
Mougin, Christian, 2018, "BRC4Env, the Biological Resource Centre for the Environment", https://doi.org/10.15454/TRBJTB, Portail Data Inra, V1
BRC4Env, the network of Biological Resource Centres for the Environment, aims at storing and providing environmental resources (biological material and associated data), in a secure way and an optimal traceability. BRC4Env supports both fundamental and applied research based on a...
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