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1 to 10 of 81,066 Results
Aug 5, 2020
Ehrenmann, Francois; Plomion, Christophe, 2020, "Oak Genome Sequencing Website", https://doi.org/10.15454/WSMRIN, Portail Data INRAE, V2
The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource by INRAE, available at http://www.oakgenome.fr/. It provides access to various resources : oak genome b...
Jul 13, 2020
Lesur Kupin, Isabelle, 2020, "EPITREE project - WGS SNPs Oak", https://doi.org/10.15454/W4XFPF, Portail Data INRAE, V1
In the EPITREE project (https://www6.inrae.fr/epitree-project/Le-projet-EPITREE) we aim at studying the distribution of methylation sites in 10 oak (Q. petraea) genomes. To do so, we had to discriminate between true C/T SNPs and C>T substitutions caused by bisulfite conversion wh...
Jun 30, 2020
Bouffartigue, Cathy; Sandrine Debille; Ana Maria Ramos Cabrer; Olivier Fabreguettes; Santiago Pereira-Lorenzo; Timothée Flutre; Luc Harvengt, 2020, "Two main genetic clusters with high admixture between forest and cultivated chestnut (Castanea sativa Mill.) in France", https://doi.org/10.15454/E2DFNJ, Portail Data INRAE, V1, UNF:6:0lpmASDvoFi+pHtRkZQiEw== [fileUNF]
To ensure methodological reproducibility the datasets used in "Two main genetic clusters with high admixture between forest and cultivated chestnut (Castanea sativa Mill.) in France", Rmd and bash files used to perform all analyses used in the article, are stored here. Please sta...
Jun 17, 2020 - Fruit tree phenology
Lanoue, David; Delépine, Anthony; Orain, Gilles; Lemarquand, Arnaud; Didelot, Frédérique; Maquaire, Jocelyn; Hameline, Sylviane, 2020, "Phenological data of 28 apple tree varieties and 4 pear tree varieties in a French orchard of Loire Valley since 2004", https://doi.org/10.15454/D4MJMJ, Portail Data INRAE, V1, UNF:6:tnUSYJfTuG6/gGzHP+r8PA== [fileUNF]
These datasets contain phenological observations on 28 apple varieties or mutants and 4 pear varieties evaluated since 2004. These data come from observations carried out since 2004 on the two sites of the Horticulture Experimental Facility based in the Loire Valley in France. Th...
Jun 17, 2020 - Fruit tree phenology
Lanoue, David; Delépine, Anthony; Orain, Gilles; Lemarquand, Arnaud; Didelot, Frédérique, 2020, "Phenological data of 26 varieties of apple, apricot, cherry trees and peach trees in a French orchard of Loire Valley since 2016", https://doi.org/10.15454/SCTMIU, Portail Data INRAE, V1, UNF:6:EbdVS5QaAOH4Pc6l8B6JyA== [fileUNF]
These datasets contain phenological observations on 7 apple, apricot, cherry varieties or mutants and 5 peach varieties evaluated since 2016. These data come from observations carried out since 2016 on the "La Rétuzière" estate belonging to the Horticulture Experimental Facility...
May 29, 2020
Laguerre, Sandrine, 2020, "MINTIA paper Biological samples", https://doi.org/10.15454/AH8CRS, Portail Data INRAE, V1
Reads corresponding to the biological samples initially analysed in "Investigating Host Microbiota Relationships Through Functional Metagenomics" of Laville et al and used to validate MINTIA pipeline on biological samples. The assembled and annotated fosmids of Laville et al are...
Apr 8, 2020
Villellas, Jesus; Martín-Forés, Irene; Mariette, Stéphanie; Massot, Marie; Guichoux, Erwan; Acuña Míguez, Belén; Hampe, Arndt; Valladares, Fernando, 2020, "76 highly validated SNP markers for Juniperus thurifera", https://doi.org/10.15454/TRFS3H, Portail Data INRAE, V1
76 highly validated SNP markers for Juniperus thurifera developped from ddRAD-Seq data following Garcia et al., 2018, except the SNP detection which was performed using discoSnp++ (http://colibread.inria.fr/software/discosnp/). PCR primer sequences and single base extension prime...
Apr 8, 2020 - Biogeco Dataverse
Bert, Didier; Lebourgeois, François; Ponton, Stéphane; Musch, Brigitte; Ducousso, Alexis, 2020, "Growth data for 26 provenances of Quercus petraea and Q robur at three common gardens in France", https://doi.org/10.15454/PADEA1, Portail Data INRAE, V1, UNF:6:Ep3GgBi9KkZP2og4DL2brA== [fileUNF]
The dataset is composed of 5 columns and 1140 lines: “Garden” is the code for the common garden: 1 is for “Petite Charnie” (western France), 2 for “Vincence” (center of France) and 3 for “Sillegny” (north-eastern France) “Code” is the code number of the oak provenance “Provenance...
Mar 24, 2020 - Biogeco Dataverse
Dutech, Cyril; Feau, Nicolas; Lesur, Isabelle; Ehrenmann, François; Letellier, Thomas; Li, Bayo; Mouden, Charlotte; Guichoux, Erwan; Desprez-Loustau, Marie-Laure; Gross, Andrin, 2020, "An easy and robust method for isolation and validation of single nucleotide polymorphic markers from the Erysiphe alphitoides, the oak powdery mildew, draft genome", https://doi.org/10.15454/UGMTBK, Portail Data INRAE, V2
This dataset includes the sequence and SNP data, and the scripts for detecting SNP from targeted sequences isolated from the Erysipe alphitoides draft genome. The draft genome sequencing used the SRR10956459 short reads (Bioproject: PRJNA593204). Assembly and Annotation of the dr...
Feb 24, 2020
Rivera, Sinziana; Vasselon, Valentin; Mary, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès, 2020, "Data supplementing the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” - raw MiSeq data, inventories", https://doi.org/10.15454/SXKA8I, Portail Data INRAE, V2, UNF:6:qkDWkBPhUOQHwccJmQL5Ng== [fileUNF]
These data supplement the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to “Molecular...
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