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61 to 70 of 82,166 Results
Plain Text - 11.2 KB - MD5: 226b7da76ef131548400c2156720d4b5
Logs from C. elegans TE annotation post-processing using REPETpostAnal program. Summarize annotations statistics for each post-processing steps.
Python Source Code - 29.5 KB - MD5: a7a5d1e82e1ba7c3f5730ebd8ce5ea7a
In-house python (>= 3) script. Used to parse REPET draft annotation (repeatome) and isolate canonical TE annotations.Requires as input i) REPET draft TE-annotation output (.gff3), ii) the TE-consensus library used for the annotation, iii) the genome fasta file. Default parameters...
Unknown - 1.2 KB - MD5: 7dc495225549030ba39b271c079d7f22
TE annot pipeline configuration file with parameters values. Mandatory for TEdenovo pipeline execution. For more information, see : https://urgi.versailles.inra.fr/Tools/REPET https://urgi.versailles.inra.fr/Tools/REPET/TEannottuto
Unknown - 2.4 KB - MD5: 0f0907566230d6ad307cec197a96ab40
TE denovo pipeline configuration file with parameters values. Mandatory for TEdenovo pipeline execution. For more information, see : https://urgi.versailles.inra.fr/Tools/REPET https://urgi.versailles.inra.fr/Tools/REPET/TEdenovotuto
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the M. incognita genome", https://doi.org/10.15454/EPTDOS, Portail Data INRAE, V2
Summary: contains all the essential files produced during the TE prediction, annotation, and post-processing in the M. incognita genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET config...
Plain Text - 11.2 KB - MD5: 7f420c02b5e039d16790c59e74f07dec
Logs from M. incognita TE annotation post-processing. Summarize annotations statistics for each post-processing steps.
Python Source Code - 29.5 KB - MD5: a7a5d1e82e1ba7c3f5730ebd8ce5ea7a
In-house python (>= 3) script. Used to parse REPET draft annotation (repeatome) and isolate canonical TE annotations.Requires as input i) REPET draft TE-annotation output (.gff3), ii) the TE-consensus library used for the annotation, iii) the genome fasta file. Default parameters...
Unknown - 7.4 KB - MD5: cc07997ef2245827c8989d14ac5a0c37
M. incognita TE prediction and annotation workflow (Rmarkdown file). Contains the executed command lines used to perform the analysis.
Jul 3, 2020 - Metabolome of tomato fruit pericarp of gbp1-c CRISPR mutant
Deborde, Catherine, 2020, "1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type", https://doi.org/10.15454/RCGZZR, Portail Data INRAE, V2, UNF:6:XTfzUN9Uy4U+BCLOvg/pBw== [fileUNF]
1D 1H-NMR metabolomic profiling of 15 DPA, 20 DPA, 25 DPA and Breaker fruit pericarp from the WT, gbp1-c4 and gbp1-c8 independent mutant lines of tomato.
Adobe PDF - 446.4 KB - MD5: 05a19a009b9d1eb23356a07dff8af5ce
Documentation
Documentation describing the files of the NMR dataset to be used with NMRProcFlow and BioStatFlow tools to replay the processing.
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