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1 to 10 of 81,102 Results
May 29, 2020 - Experimental - Observation - Simulation Dataverse
Bénard, Camille; Biais, Benoit; Ballias, Patricia; Beauvoit, Bertrand; Bernillon, Stéphane; Cabasson, Cécile; Colombié, Sophie; Deborde, Catherine; Gaillard, Pierre; Génard, Michel; Gibon, Yves; Jacob, Daniel; Maucourt, Mickael; Moing, Annick; Vercambre, Gilles, 2018, "FRIM - Fruit Integrative Modelling", https://doi.org/10.15454/95JUTK, Portail Data INRAE, V4
The project aimed to build a virtual tomato fruit that enables the prediction of metabolite levels given genetic and environmental inputs, by an iterative process between laboratories which combine expertise in fruit biology, ecophysiology, theoretical and experimental biochemist...
May 18, 2020 - SPOmics
Delannoy, Etienne; Jakalski, Marcin, 2020, "The genomic impact of mycoheterotrophy: targeted gene losses but extensive expression reprogramming", https://doi.org/10.15454/HR9KUX, Portail Data INRAE, V1, UNF:6:jY13iPp6Ar4xBi23WIDSwA== [fileUNF]
this dataset provides the results of the de novo assembly and annotation of RNA-seq data from the mycoheterotrophic orchids Neottia nidus-avis and Epipogium aphyllum. For each species, a gff file, an annotation file and an expression count table is provided. The raw sequencing da...
Mar 17, 2020
Nikolic, Natacha; Thompson, Paul; de Bruyn, Mark; Macé, Matthias; Chevalet, Claude, 2020, "Microsatellite data from: Evolutionary history of a Scottish harbour seal population", https://doi.org/10.15454/AOZ7JI, Portail Data INRAE, V2
A total of 93 harbour seal samples from Moray Firth (North East Scotland ) were genotyped with 25 microsatellite markers using fluorescent labelled primers (see Appendix A, B from Nikolic et al. 2020). PCR amplification was carried out using Applied Biosystems 2720 Thermal Cycler...
Mar 10, 2020 - PMB Metabolomics
Jacob, Daniel, 2020, "ODAM Virtual Disk Image (VDI) for Oracle VM VirtualBox - Zipped with 7zip.", https://doi.org/10.15454/C9LAEF, Portail Data INRAE, V1
ODAM (Open Data for Access and Mining) is an Experiment Data Table Management System (EDTMS) that implements a simple way to make research data broadly accessible and fully available for reuse, including by script languages such as R and Python. The main purpose is to make a data...
Feb 28, 2020 - URGI Plant and Fungi Dataverse
Papoutsoglou, Evangelia A.; Faria, Daniel; Arend, Daniel; Arnaud, Elizabeth; Athanasiadis, Ioannis N.; Chaves, Inês; Coppens, Frederik; Cornut, Guillaume; Costa, Bruno V.; Ćwiek-Kupczyńska, Hanna; Droesbeke, Bert; Finkers, Richard; Gruden, Kristina; Junker, Astrid; King, Graham J.; Krajewski, Paweł; Lange, Matthias; Laporte, Marie-Angélique; Michotey, Célia; Oppermann, Markus; Ostler, Richard; Poorter, Hendrik; Ramı́rez-Gonzalez, Ricardo; Ramšak, Živa; Reif, Jochen C.; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Scholz, Uwe; Tardieu, François; Uauy, Cristobal; Usadel, Björn; Visser, Richard G.F.; Weise, Stephan; Kersey, Paul J.; Miguel, Célia M.; Adam-Blondon, Anne-Françoise; Pommier, Cyril, 2020, "Enabling reusability of plant phenomic datasets with MIAPPE 1.1 - Supplementary dataset", https://doi.org/10.15454/1YXVZV, Portail Data INRAE, V1
Exemplar dataset demonstrating the use of MIAPPE as described in "Enabling reusability of plant phenomic datasets with MIAPPE 1.1". Enabling data reuse and knowledge discovery is increasingly critical in modern science, and requires an effort towards standardizing data publicatio...
Feb 28, 2020 - URGI Plant and Fungi Dataverse
Chaves, Inês; Miguel, Célia M.; Faria, Daniel; Costa, Bruno V., 2020, "Enabling reusability of plant phenomic datasets with MIAPPE 1.1 - Supplementary dataset iBET", https://doi.org/10.15454/AH6U4A, Portail Data INRAE, V2
Spreadsheet file for the iBET cork oak dataset, accompanying the Enabling reusability of plant phenomic datasets with MIAPPE 1.1 paper
Feb 28, 2020 - URGI Plant and Fungi Dataverse
Michotey, Célia, 2020, "Integrating genome annotation and QTL position to identify candidate genes for productivity, architecture and water-use efficiency in Populus spp - Supplementary dataset", https://doi.org/10.15454/EASUQV, Portail Data INRAE, V1
Data sets in different formats for the related paper "Integrating genome annotation and QTL position to identify candidate genes for productivity, architecture and water-use efficiency in Populus spp", doi: 10.1186/1471-2229-12-173 Spreadsheet: GNPIS_poplar_spreadsheet.xlsx ISA-T...
Feb 28, 2020 - URGI Plant and Fungi Dataverse
Oury, François-Xavier; Pommier, Cyril; Charmet, Gilles, 2020, "Enabling reusability of plant phenomic datasets with MIAPPE 1.1 - Supplementary dataset INRA Wheat", https://doi.org/10.15454/1AFKZ2, Portail Data INRAE, V1
This is a subset of the dataset "Winter wheat (Triticum aestivum L) phenotypic data from the multiannual, multilocal field trials of the INRA Small Grain Cereals Network." (doi:10.15454/1.4489666216568333E12). It is an ISA-Tab archive for the INRA wheat dataset, accompanying the...
Feb 26, 2020 - Grapevine Downy Mildew Genomics Dataverse
Dussert, Yann; Legrand, Ludovic; Mazet, Isabelle D.; Couture, Carole; Piron, Marie-Christine; Serre, Rémy-Felix; Bouchez, Olivier; Mestre, Pere; Toffolatti, Sylvia Laura; Giraud, Tatiana; Delmotte, François, 2020, "Data from: Identification of the first oomycete mating-type locus sequence in the grapevine downy mildew pathogen, Plasmopara viticola", https://doi.org/10.15454/ILQ12T, Portail Data INRAE, V1
This dataset includes analysis files for the paper "Identification of the first oomycete mating-type locus sequence in the grapevine downy mildew pathogen, Plasmopara viticola" submitted to bioRxiv (doi.org/10.1101/2020.02.26.962936). Archives can contain README files with import...
Feb 18, 2020
Vacher, Corinne, 2020, "R scripts used to infer microbial networks from metabarcoding data and validate them using text-mining", https://doi.org/10.15454/5WD6P6, Portail Data INRAE, V1, UNF:6:LNjhKptvEnA9T2eqRWfBNQ== [fileUNF]
R scripts and datafiles used to infer microbial association networks from metabarcoding data of grapevine foliar samples infected or not by powdery mildew (Erysiphe necator). R script used to search for microbial associations in the Scopus database.
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