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1 to 10 of 81,738 Results
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "TE polymorphisms detection and analysis with PopoolationTE2", https://doi.org/10.15454/EWJCT8, Portail Data INRAE, V2
Summary: contains the i) popoolationTE2 workflow used to detect polymorphism across M. incognita's isolates and evaluate the tool error rate, ii) the popoolationTE2 output file containing all the potential TE polymorphisms, iii) the global analysis workflow.
Unknown - 94.3 KB - MD5: 3558088a924104a0d5c00151471a0639
The global analysis workflow. Main file of the study.
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa; Hassanaly-Goulamhoussen, Rahim; Danchin, Eienne, 2020, "Experimental validations of TE-impacted coding or regulatory loci", https://doi.org/10.15454/NQAF31, Portail Data INRAE, V2
Contains experimental validations results. The sup_mat_2.pptx file summarize: i) Characteristics of the tested loci: position in the genome, inserted TE, the region surrounding the insertion point, TE frequency values per isolate, experimental design (primers sequences, Tm), ii)...
TIFF Image - 2.1 MB - MD5: 57d8bc07c7327c18c26e9c268f7ab53d
original result picture of the positive control (actin-encoding gene (Minc3s00960g19311)) from the PCR experiment (morelos isolate).
TIFF Image - 2.1 MB - MD5: bb73b1a6ae32f2deec4af523faccd624
original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00026' in 12 isolates of M. incognita.
TIFF Image - 2.1 MB - MD5: 04a7eaae5de46d1e9746ac70b19f5b92
original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00450' in 12 isolates of M. incognita.
TIFF Image - 2.1 MB - MD5: 38102ec9205c7043b0fe4ffc47b1e468
original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00751' in 12 isolates of M. incognita.
TIFF Image - 2.1 MB - MD5: 385a3c1fcbee6ab8d5b7d046e40fa41e
original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00909' in 12 isolates of M. incognita.
TIFF Image - 2.1 MB - MD5: 5415ea76dee8e54398a07e54e23091b0
original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s01138' in 12 isolates of M. incognita.
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the C. elegans genome", https://doi.org/10.15454/LQCIW0, Portail Data INRAE, V1
Summary: contains all the essential files produced during the TE prediction, annotation, and post-processing in the C. elegans genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET configur...
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