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1 to 9 of 9 Results
Jul 15, 2020 - Experimental - Observation - Simulation Dataverse
Bénard, Camille; Biais, Benoit; Ballias, Patricia; Beauvoit, Bertrand; Bernillon, Stéphane; Cabasson, Cécile; Colombié, Sophie; Deborde, Catherine; Gaillard, Pierre; Génard, Michel; Gibon, Yves; Jacob, Daniel; Maucourt, Mickael; Moing, Annick; Vercambre, Gilles, 2018, "FRIM - Fruit Integrative Modelling", https://doi.org/10.15454/95JUTK, Portail Data INRAE, V5
The project aimed to build a virtual tomato fruit that enables the prediction of metabolite levels given genetic and environmental inputs, by an iterative process between laboratories which combine expertise in fruit biology, ecophysiology, theoretical and experimental biochemist...
Feb 6, 2020 - Grapevine Downy Mildew Genomics Dataverse
Dussert, Yann; Couture, Carole; Mazet, Isabelle D.; Gouzy, Jérôme; Piron, Marie-Christine; Kuchly, Claire; Bouchez, Olivier; Rispe, Claude; Mestre, Pere; Delmotte, François, 2018, "Genome assembly and annotation of Plasmopara viticola, the grapevine downy mildew pathogen", https://doi.org/10.15454/4NYHD6, Portail Data INRAE, V4
This dataset includes the assembly and annotation of the Plasmopara viticola genome (INRA-PV221 isolate), following genome sequencing using PacBio long reads at deep coverage. The paper describing the genome is now published in Genome Biology and Evolution (doi.org/10.1093/gbe/ev...
Dec 7, 2018 - Grapevine Downy Mildew Genomics Dataverse
Dussert, Yann; Mazet, Isabelle D.; Couture, Carole; Gouzy, Jérôme; Piron, Marie-Christine; Kuchly, Claire; Bouchez, Olivier; Rispe, Claude; Mestre, Pere; Delmotte, François, 2018, "Data from: A high-quality grapevine downy mildew genome assembly reveals rapidly evolving and lineage-specific putative host adaptation genes", https://doi.org/10.15454/8NZ8X9, Portail Data INRAE, V2
This dataset includes analysis files for the paper "A high-quality grapevine downy mildew genome assembly reveals rapidly evolving and lineage-specific putative host adaptation genes" now available in Genome Biology and Evolution (doi.org/10.1093/gbe/evz048). Archives can contain...
Nov 8, 2018 - Grapevine Downy Mildew Genomics Dataverse
Dussert, Yann; Couture, Carole; Mazet, Isabelle D.; Gouzy, Jérôme; Piron, Marie-Christine; Rispe, Claude; Mestre, Pere; Delmotte, François, 2018, "Genome assembly and annotation of Plasmopara muralis, the downy mildew pathogen on Parthenocissus tricuspidata and Parthenocissus quinquefolia", https://doi.org/10.15454/Q1QJYK, Portail Data INRAE, V2
This dataset includes the assembly and annotation of the Plasmopara muralis genome (INRA-PM001 isolate). Plasmopara muralis is the causal agent of downy mildew on Parthenocissus tricuspidata and Parthenocissus quinquefolia. The paper describing the genome is now published in Geno...
Oct 19, 2018 - URGI Plant and Fungi Dataverse
URGI, 2018, "Transposable element annotation of Botrytis cinerea B05.10", https://doi.org/10.15454/TFYH9N, Portail Data INRAE, V1
The TEdenovo was launched on Botrytis cinerea strain B05.10 whole genome (18 chromosomes, NCBI bioProject PRJNA264284, assembly ASM83294v1). The TE Consensus library from the TEdenovo (36 consensus) was filtered out for consensus sequences classified as SSR, or noCat built from l...
Aug 3, 2018
Pauvert, Charlie; Buée, Marc; Laval, Valérie; Edel-Hermann, Véronique; Fauchery, Laure; Gautier, Angélique; Lesur Kupin, Isabelle; Vallance, Jessica; Vacher, Corinne, 2018, "DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils.", https://doi.org/10.15454/8CVWRR, Portail Data INRAE, V1
This sequence dataset (FASTQ format) was obtained by metabarcoding an artificial (mock) fungal community. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platform (v3 chemistry, 2x250 bp)...
Biogeco Dataverse(INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement - www.inrae.fr)
Biogeco Dataverse logo
May 18, 2018Experimental - Observation - Simulation Dataverse
BIOGECO (BIOdiversité, GEnes & COmmunautés) est une Unité Mixte de Recherche (UMR) de l’INRA et de l’université de Bordeaux. L’unité comprend des spécialistes de l’écologie, de la génétique des populations, quantitative et évolutive. Les activités de recherche menées par BIOGECO...
Grapevine Downy Mildew Genomics Dataverse(INRA - Institut National de la Recherche Agronomique)
Mar 29, 2018
This dataverse includes data generated for the grapevine downy mildew genome project.
URGI Plant and Fungi Dataverse(www.urgi.versailles.inra.fr)
Jan 18, 2018
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