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1 to 10 of 10 Results
Jun 11, 2020 - PMB Metabolomics
Deborde, Catherine; Roch, Léa; Moing, Annick; Jacob, Daniel, 2019, "1D 1H-NMR profiling of 8 fleshy fruits (mixed-stage samples)", https://doi.org/10.15454/BQHGR9, Portail Data INRAE, V3, UNF:6:CVoLl0fa9rXcSn5u2yGRmQ== [fileUNF]
1D 1H-NMR metabolomic profiling of 8 fleshy fruit species, including three herbaceous species, eggplant, pepper and cucumber, three tree species, apple, peach and clementine, and two vines, kiwifruit and grape. “stage-mixture sample”, dedicated to the identification of major solu...
Jan 31, 2020
Causse, Mathilde, 2019, "Dataset for MetaGWAS analysis of tomato fruit quality", https://doi.org/10.15454/TWFDYW, Portail Data INRAE, V2
This dataset corresponds to the data and script used for a meta-analysis of genome-wide association studies in tomato for main flavor-related traits. They are based on re-analysis of original data provided in Sauvage et al (2014), Bauchet et al (2017) and Tieman et al (2017). Eac...
Sep 18, 2019
Decroocq, Veronique, 2019, "Japanese plum small RNA sequencing", https://doi.org/10.15454/O07SXQ, Portail Data INRAE, V1
Deep sequencing of non-transgenic and eIFiso4G-silenced transgenic Japanese plum (Prunus salicina) small RNA libraries. Cultivar Angeleno. Files are in fastq format, compressed in gz
Jul 30, 2019
Pauvert, Charlie; Vallance, Jessica; Delière, Laurent; Buée, Marc; Vacher, Corinne, 2019, "Amplicon Sequence Variant (ASV) table obtained by metabarcoding foliar fungal communities in conventional and organic vineyards", https://doi.org/10.15454/WOICSE, Portail Data INRAE, V1, UNF:6:PSwFBpb4Vxgr5rwUlkcPUQ== [fileUNF]
This Amplicon Sequence Variant (ASV) table was obtained by metabarcoding foliar fungal communities in conventional and organic vineyards. This table was generated after the application of the bioinformatics scripts (at https://doi.org/10.15454/NSHUAQ) to the sequences available a...
Jul 26, 2019
Lagrée Marie, 2019, "Impact of oxidative stress (H2O2) on Pseudomonas Graminis - LCMS dataset", https://doi.org/10.15454/ZAWDKQ, Portail Data INRAE, V2
Impact of atmospheric stresses on clouds microorganisms metabolism: the case of H2O2 Dataset: The dataset contains 32 files created from 500MHz NMR spectrometer and cdf files created from LC-MS system:62 samples and 9 CQP (pools) injected in positive ionization mode and 64 sample...
Jul 26, 2019
Lagrée Marie, 2019, "Impact of oxidative stress (H2O2) on Pseudomonas Graminis - NMR dataset", https://doi.org/10.15454/Q7VKT5, Portail Data INRAE, V2
Impact of atmospheric stresses on clouds microorganisms metabolism: the case of H2O2 : The dataset contains 32 files created from 500MHz NMR spectrometer and cdf files created from LC-MS system:62 samples and 9 CQP (pools) injected in positive ionization mode and 64 samples and 1...
Jul 12, 2019 - Grapevine Downy Mildew Genomics Dataverse
Dussert, Yann; Gouzy, Jerome; Richart-Cervera, Sylvie; Mazet, Isabelle; Deliere, Laurent; Couture, Carole; Legrand, Ludovic; Piron, Marie-Christine; Bouchez, Olivier; Mestre, Pere; Delmotte, Francois, 2019, "Gene annotation of the Illumina draft of the Plasmopara viticola genome", https://doi.org/10.15454/NQEX46, Portail Data INRAE, V1
This dataset includes the gene annotation for the Illumina draft of the Plasmopara viticola genome. This genome draft has been published in Dussert et al. 2016 (doi.org/10.1128/genomeA.00987-16). The assembly can be found on GenBank (accession GCA_001695595.1).
May 9, 2019
Pauvert, Charlie; Vallance, Jessica; Delière, Laurent; Buée, Marc; Vacher, Corinne, 2019, "Bioinformatic scripts to assess the effect of the cropping system on both community and network α- and β-properties of fungal microbiota", https://doi.org/10.15454/NSHUAQ, Portail Data INRAE, V1
These bioinformatics scripts were applied to the sequences available at https://doi.org/10.15454/3DPFNJ. They are based on several softwares, including SparCC (Friedman and Alm 2012) and DADA2 (Callahan et al. 2016). The code corresponds to R and R markdown files. These scripts w...
May 7, 2019
Pauvert, Charlie; Vallance, Jessica; Delière, Laurent; Buée, Marc; Vacher, Corinne, 2019, "DNA metabarcoding of foliar fungal communities in conventional and organic vineyards", https://doi.org/10.15454/3DPFNJ, Portail Data INRAE, V1
This sequence dataset (FASTQ format) was obtained by metabarcoding foliar fungal communities in conventional and organic vineyards. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platfor...
PMB Metabolomics(www.inra.fr)
Apr 10, 2019
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