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1 to 10 of 11 Results
Jul 24, 2020 - URGI Plant and Fungi Dataverse
Bernard, Anthony; Dirlewanger, Elisabeth; Delmas, Marine; Barreneche, Teresa, 2018, "INRAE's Walnut Genetic Resources Observation (Historical data 1965-2016)", https://doi.org/10.15454/58SYJV, Portail Data INRAE, V5, UNF:6:UiYp13tH0Wr2/sOrNNBPVw== [fileUNF]
Persian or English walnut (Juglans regia L.), the walnut species cultivated for nut production, is one of the oldest food sources known and is grown worldwide in temperate areas. In this work, historical data have been collected thanks to the team of the late Eric Germain, former...
Jul 15, 2020 - Experimental - Observation - Simulation Dataverse
Bénard, Camille; Biais, Benoit; Ballias, Patricia; Beauvoit, Bertrand; Bernillon, Stéphane; Cabasson, Cécile; Colombié, Sophie; Deborde, Catherine; Gaillard, Pierre; Génard, Michel; Gibon, Yves; Jacob, Daniel; Maucourt, Mickael; Moing, Annick; Vercambre, Gilles, 2018, "FRIM - Fruit Integrative Modelling", https://doi.org/10.15454/95JUTK, Portail Data INRAE, V5
The project aimed to build a virtual tomato fruit that enables the prediction of metabolite levels given genetic and environmental inputs, by an iterative process between laboratories which combine expertise in fruit biology, ecophysiology, theoretical and experimental biochemist...
Nov 23, 2018 - URGI Plant and Fungi Dataverse
Canaguier, Aurélie; Grimplet, Jérôme; Scalabrin, Simone; Di Gaspero, Gabriele; Mohellibi, Nacer; Choisne, Nathalie; Rombault, Stéphane; Rustenholtz, Camille; Morgante, Michele; Quesneville, Hadi; Adam-Blondon, Anne-Françoise, 2018, "A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3)", https://doi.org/10.15454/1.5009072354498936E12, Portail Data INRAE, V3
Abstract:The dataset comprises 12X.v2 grapevine reference genome assembly and its VCost.v3 gene annotation in Genbank format. The 12X.v2 chromosome assembly is based on the scaffolds of the grapevine reference genome build (FN594950-FN597014, EMBL release 102; Vitis vinifera cv....
Nov 23, 2018 - URGI Plant and Fungi Dataverse
Canaguier, Aurélie; Le Paslier, Marie-Christine; Duchêne, Eric; Scalabrin, Simone; Di Gaspero, Gabriele; Mohellibi, Nacer; Choisne, Nathalie; Berard, Aurélie; Chauveau, Aurélie; Le Clainche, Isabelle; Bounon, Remy; Guichard, Cécile; Rustenholtz, Camille; Brunel, Dominique; Morgante, Michele; Quesneville, Hadi; Adam-Blondon, Anne-Françoise, 2018, "Development of a new version of the grapevine reference genome assembly (12X.v2) based on genetic maps and paired-end sequences.", https://doi.org/10.15454/1.4962347083032307E12, Portail Data INRAE, V3
Abstract:The dataset comprises (i) two excel files describing in details the SY x GR, CH x BI and the RI x GW genetic maps and the markers that were used to order and orient the scaffolds of the grapevine reference genome build (FN594950-FN597014, EMBL release 102; Vitis vinifera...
Oct 19, 2018 - URGI Plant and Fungi Dataverse
URGI, 2018, "Transposable element annotation of Botrytis cinerea B05.10", https://doi.org/10.15454/TFYH9N, Portail Data INRAE, V1
The TEdenovo was launched on Botrytis cinerea strain B05.10 whole genome (18 chromosomes, NCBI bioProject PRJNA264284, assembly ASM83294v1). The TE Consensus library from the TEdenovo (36 consensus) was filtered out for consensus sequences classified as SSR, or noCat built from l...
Oct 4, 2018 - URGI Plant and Fungi Dataverse
Quesneville, Hadi, 2018, "Transposable element annotation of Arabidopsis lyrata subsp. lyrata", https://doi.org/10.15454/INYUVZ, Portail Data INRAE, V1
After running the TEdenovo, we got a filtered library (without the SSR consensus and without the unclassified consensus if they were generated with less than 10 HSPs). We have clustered this library and the cluster number is in the header of each consensus. After a first TEannot...
Oct 1, 2018 - Biogeco Dataverse
Caignard, Thomas; Kremer, Antoine, 2018, "TREEPEACE: Heritability and genetic architecture of reproduction-related traits in a temperate oak species", https://doi.org/10.15454/PGKKTK, Portail Data INRAE, V1, UNF:6:jSMwkS9b86gQdDfMCdgKsA== [fileUNF]
The dataset contains data characterizing the reproduction of 342 trees monitored during four years, from 2014 to 2017, within a full-sib family of pedunculated oak (Quercus robur) situated at the experimental unit of Bourran, France. Trees were planted within a randomized incompl...
Sep 26, 2018
Deborde, Catherine; Fontaine, Jean-Xavier; Molinié, Roland; Botana, Adolfo; Jacob, Daniel, 2018, "1D 1H-NMR profiling of wheat samples", https://doi.org/10.15454/ERCVZR, Portail Data INRAE, V1
NMR metabolomic profiling of wheat samples recorded on three sites (JEOL400, Bruker 500 and Bruker 600 MHz) - To be used with NMRProcFlow (https://nmrprocflow.org)
Aug 20, 2018 - GnpIS Dataverse
François-Xavier Oury; Emmanuel Heumez; Bernard Rolland; Jérôme Auzanneau; Pierre Bérard; Maryse Brancourt-Hulmel; Xavier Charrier; Hubert Chiron; Camille Depatureaux; Laurent Falchetto; Olivier Gardet; Stéphane Gilles; Alex Giraud; Christophe Lecomte; Jean-Yves Morlais; Pierre Pluchard; Didier Tropée; Maxime Trottet; Patrice Walczak; Gérard Doussinault; Michel Rousset; Gilles Charmet, 2018, "Winter wheat (Triticum aestivum L) phenotypic data from the multiannual, multilocal field trials of the INRA Small Grain Cereals Network.", https://doi.org/10.15454/1.4489666216568333E12, Portail Data INRAE, V5
Abstract:Winter wheat phenotypic data from a French experimental network. It includes observations for different characters (agronomic, quality, disease, phenology,…) on more than 10 experimental locations during more than 15 years and for more than 1700 winter wheat genotypes.
Apr 13, 2018 - Biogeco Dataverse
Lesur Kupin, Isabelle, 2018, "TREEPEACE: Development of target sequence capture and estimation of genomic relatedness in a mixed oak stand", https://doi.org/10.15454/OMO2JC, Portail Data INRAE, V1
Le jeu de données est constitué de 191,281 SNPs identifiés dans 297 arbres (mélange de Q. robur et Q. petraea) situés dans la forêt de La Petite Charnie. Ces SNPs ont été détectés sur le génome de référence du chêne 3P, obtenu dans le cadre du projet ANR Genoak et hébergé par l'U...
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