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1 to 4 of 4 Results
Feb 28, 2020 - URGI Plant and Fungi Dataverse
Papoutsoglou, Evangelia A.; Faria, Daniel; Arend, Daniel; Arnaud, Elizabeth; Athanasiadis, Ioannis N.; Chaves, Inês; Coppens, Frederik; Cornut, Guillaume; Costa, Bruno V.; Ćwiek-Kupczyńska, Hanna; Droesbeke, Bert; Finkers, Richard; Gruden, Kristina; Junker, Astrid; King, Graham J.; Krajewski, Paweł; Lange, Matthias; Laporte, Marie-Angélique; Michotey, Célia; Oppermann, Markus; Ostler, Richard; Poorter, Hendrik; Ramı́rez-Gonzalez, Ricardo; Ramšak, Živa; Reif, Jochen C.; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Scholz, Uwe; Tardieu, François; Uauy, Cristobal; Usadel, Björn; Visser, Richard G.F.; Weise, Stephan; Kersey, Paul J.; Miguel, Célia M.; Adam-Blondon, Anne-Françoise; Pommier, Cyril, 2020, "Enabling reusability of plant phenomic datasets with MIAPPE 1.1 - Supplementary dataset", https://doi.org/10.15454/1YXVZV, Portail Data INRAE, V1
Exemplar dataset demonstrating the use of MIAPPE as described in "Enabling reusability of plant phenomic datasets with MIAPPE 1.1". Enabling data reuse and knowledge discovery is increasingly critical in modern science, and requires an effort towards standardizing data publicatio...
May 21, 2019 - URGI Plant and Fungi Dataverse
Le Paslier, Marie-Christine; Choisne, Nathalie; Bacilieri, Roberto; Boursiquot, Jean-Michel; Bras, Marc; Brunel, Dominique; Chauveau, Aurélie; Hausmann, Ludger; Lacombe, Thierry; Laucou, Valérie; Launay, Amandine; Marchal, Cécile; Martinez-Zapater, José-Miguel; Berard, Aurélie; Quesneville, Hadi; Töpfer, Reinhard; Torres-Perez, Rafael; Adam-Blondon, Anne-Françoise, 2019, "A dataset of 9.896 single nuclear polymorphisms for 112 wild grapes, obtained with the GrapeReSeq 18K Vitis chip", https://doi.org/10.15454/9RUCEP, Portail Data INRAE, V3
The dataset, comprising 9.896 SNPs for 112 wild grapes (Vitis vinifera subsp. sylvestris), is made available here in support of the paper : Ramos-Madrigal J, Wiborg Runge AK, Bouby L, Lacombe T, Samaniego-Castruita JA, Adam-Blondon AF, Figueiral I, Hallavant C, Martínez-Zapater J...
Nov 23, 2018 - URGI Plant and Fungi Dataverse
Canaguier, Aurélie; Grimplet, Jérôme; Scalabrin, Simone; Di Gaspero, Gabriele; Mohellibi, Nacer; Choisne, Nathalie; Rombault, Stéphane; Rustenholtz, Camille; Morgante, Michele; Quesneville, Hadi; Adam-Blondon, Anne-Françoise, 2018, "A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3)", https://doi.org/10.15454/1.5009072354498936E12, Portail Data INRAE, V3
Abstract:The dataset comprises 12X.v2 grapevine reference genome assembly and its VCost.v3 gene annotation in Genbank format. The 12X.v2 chromosome assembly is based on the scaffolds of the grapevine reference genome build (FN594950-FN597014, EMBL release 102; Vitis vinifera cv....
Nov 23, 2018 - URGI Plant and Fungi Dataverse
Canaguier, Aurélie; Le Paslier, Marie-Christine; Duchêne, Eric; Scalabrin, Simone; Di Gaspero, Gabriele; Mohellibi, Nacer; Choisne, Nathalie; Berard, Aurélie; Chauveau, Aurélie; Le Clainche, Isabelle; Bounon, Remy; Guichard, Cécile; Rustenholtz, Camille; Brunel, Dominique; Morgante, Michele; Quesneville, Hadi; Adam-Blondon, Anne-Françoise, 2018, "Development of a new version of the grapevine reference genome assembly (12X.v2) based on genetic maps and paired-end sequences.", https://doi.org/10.15454/1.4962347083032307E12, Portail Data INRAE, V3
Abstract:The dataset comprises (i) two excel files describing in details the SY x GR, CH x BI and the RI x GW genetic maps and the markers that were used to order and orient the scaffolds of the grapevine reference genome build (FN594950-FN597014, EMBL release 102; Vitis vinifera...
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