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1 to 10 of 55 Results
Jul 3, 2020 - Metabolome of tomato fruit pericarp of gbp1-c CRISPR mutant
Deborde, Catherine, 2020, "1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type", https://doi.org/10.15454/RCGZZR, Portail Data INRAE, V2, UNF:6:XTfzUN9Uy4U+BCLOvg/pBw== [fileUNF]
1D 1H-NMR metabolomic profiling of 15 DPA, 20 DPA, 25 DPA and Breaker fruit pericarp from the WT, gbp1-c4 and gbp1-c8 independent mutant lines of tomato.
Jun 11, 2020 - PMB Metabolomics
Deborde, Catherine; Roch, Léa; Moing, Annick; Jacob, Daniel, 2019, "1D 1H-NMR profiling of 8 fleshy fruits (mixed-stage samples)", https://doi.org/10.15454/BQHGR9, Portail Data INRAE, V3, UNF:6:CVoLl0fa9rXcSn5u2yGRmQ== [fileUNF]
1D 1H-NMR metabolomic profiling of 8 fleshy fruit species, including three herbaceous species, eggplant, pepper and cucumber, three tree species, apple, peach and clementine, and two vines, kiwifruit and grape. “stage-mixture sample”, dedicated to the identification of major solu...
Sep 26, 2018
Deborde, Catherine; Fontaine, Jean-Xavier; Molinié, Roland; Botana, Adolfo; Jacob, Daniel, 2018, "1D 1H-NMR profiling of wheat samples", https://doi.org/10.15454/ERCVZR, Portail Data INRAE, V1
NMR metabolomic profiling of wheat samples recorded on three sites (JEOL400, Bruker 500 and Bruker 600 MHz) - To be used with NMRProcFlow (https://nmrprocflow.org)
Mar 23, 2018
Legras, Jean-Luc; Galeote, Virginie; Bigey, Frédéric; Camarasa, Carole; Marsit, Souhir; Nidelet, Thibault; Sanchez, Isabelle; Couloux, Arnaud; Guy, Julie; Franco-Duarte, Ricardo; Marcet-Houben, Marina; Gabaldon, Toni; Schuller, Dorit; Sampaio, José Paulo; Dequin, Sylvie, 2018, "Adaptation of S. cerevisiae to fermented food environments reveals remarkable genome plasticity and the footprints of domestication.", https://doi.org/10.15454/2VZ16D, Portail Data INRAE, V1
Different Variant data set combining genotypic data data from the newly sequenced strains and data from available genomes sequences obtained at SGD. Data at vcf format or at hapmap format (.ped files).
Jan 10, 2020 - ThaliaDB maize Dataverse
Nicolas, Stephane; Negro, Sandra; Madur, Delphine; Clipet, Camille; Combes, Valérie; Bauland, Cyril; Tardieu, François; Charcosset, Alain; Moreau, Laurence, 2020, "Amaizing Dent Panel Genotyping Dataset (354 Public Lines)", https://doi.org/10.15454/GAHEU0, Portail Data INRAE, V1, UNF:6:xDkI2MetKCmc6/d1u04ZkA== [fileUNF]
Genotyping matrix of a collection of 354 dent maize inbred lines corresponding to the "Public Amaizing Dent Panel". This panel includes: (i) 254 dent inbred lines from "Drops panel" assembled in the frame of F7P European projects DROPs (FP7-244374, PI: F. Tardieu) and (ii) 100 de...
Jul 30, 2019
Pauvert, Charlie; Vallance, Jessica; Delière, Laurent; Buée, Marc; Vacher, Corinne, 2019, "Amplicon Sequence Variant (ASV) table obtained by metabarcoding foliar fungal communities in conventional and organic vineyards", https://doi.org/10.15454/WOICSE, Portail Data INRAE, V1, UNF:6:PSwFBpb4Vxgr5rwUlkcPUQ== [fileUNF]
This Amplicon Sequence Variant (ASV) table was obtained by metabarcoding foliar fungal communities in conventional and organic vineyards. This table was generated after the application of the bioinformatics scripts (at https://doi.org/10.15454/NSHUAQ) to the sequences available a...
Jul 16, 2020
Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts to analyze metabarcoding data of fungal communities", https://doi.org/10.15454/0CNFWS, Portail Data INRAE, V1, UNF:6:AbAHJCHSVEP+kwY2z9TN7A== [fileUNF]
This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al., Maternal effects shape seed fungal communities in Quercus petraea. Submitted). The bioinformatic script was applied to raw sequences after paired-end sequences were j...
Sep 2, 2019
Pauvert, Charlie; Buee, Marc; Laval, Valérie; Edel-Hermann, Véronique; Fauchery, Laure; Gautier, Angélique; Lesur Kupin, Isabelle; Vallance, Jessica; Vacher, Corinne, 2018, "Bioinformatic scripts allowing the comparison of fungal metabarcoding pipelines", https://doi.org/10.15454/VKTWKR, Portail Data INRAE, V4
This dataset contains scripts and code that can be used to compare metabarcoding pipelines using a fungal mock community. These bioinformatics scripts were applied to the sequences available at https://doi.org/10.15454/8CVWRR (Pauvert et al. Bioinformatics matters: the accuracy o...
May 9, 2019
Pauvert, Charlie; Vallance, Jessica; Delière, Laurent; Buée, Marc; Vacher, Corinne, 2019, "Bioinformatic scripts to assess the effect of the cropping system on both community and network α- and β-properties of fungal microbiota", https://doi.org/10.15454/NSHUAQ, Portail Data INRAE, V1
These bioinformatics scripts were applied to the sequences available at https://doi.org/10.15454/3DPFNJ. They are based on several softwares, including SparCC (Friedman and Alm 2012) and DADA2 (Callahan et al. 2016). The code corresponds to R and R markdown files. These scripts w...
Dec 7, 2018 - Grapevine Downy Mildew Genomics Dataverse
Dussert, Yann; Mazet, Isabelle D.; Couture, Carole; Gouzy, Jérôme; Piron, Marie-Christine; Kuchly, Claire; Bouchez, Olivier; Rispe, Claude; Mestre, Pere; Delmotte, François, 2018, "Data from: A high-quality grapevine downy mildew genome assembly reveals rapidly evolving and lineage-specific putative host adaptation genes", https://doi.org/10.15454/8NZ8X9, Portail Data INRAE, V2
This dataset includes analysis files for the paper "A high-quality grapevine downy mildew genome assembly reveals rapidly evolving and lineage-specific putative host adaptation genes" now available in Genome Biology and Evolution (doi.org/10.1093/gbe/evz048). Archives can contain...
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