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1 to 10 of 55 Results
URGI Plant and Fungi Dataverse(www.urgi.versailles.inra.fr)
Jan 18, 2018
Mar 23, 2018
Legras, Jean-Luc; Galeote, Virginie; Bigey, Frédéric; Camarasa, Carole; Marsit, Souhir; Nidelet, Thibault; Sanchez, Isabelle; Couloux, Arnaud; Guy, Julie; Franco-Duarte, Ricardo; Marcet-Houben, Marina; Gabaldon, Toni; Schuller, Dorit; Sampaio, José Paulo; Dequin, Sylvie, 2018, "Adaptation of S. cerevisiae to fermented food environments reveals remarkable genome plasticity and the footprints of domestication.", https://doi.org/10.15454/2VZ16D, Portail Data INRAE, V1
Different Variant data set combining genotypic data data from the newly sequenced strains and data from available genomes sequences obtained at SGD. Data at vcf format or at hapmap format (.ped files).
Grapevine Downy Mildew Genomics Dataverse(INRA - Institut National de la Recherche Agronomique)
Mar 29, 2018
This dataverse includes data generated for the grapevine downy mildew genome project.
Aug 3, 2018
Pauvert, Charlie; Buée, Marc; Laval, Valérie; Edel-Hermann, Véronique; Fauchery, Laure; Gautier, Angélique; Lesur Kupin, Isabelle; Vallance, Jessica; Vacher, Corinne, 2018, "DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils.", https://doi.org/10.15454/8CVWRR, Portail Data INRAE, V1
This sequence dataset (FASTQ format) was obtained by metabarcoding an artificial (mock) fungal community. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platform (v3 chemistry, 2x250 bp)...
Aug 18, 2018
Eder, Matthias; Nidelet, Thibault; Sanchez, Isabelle; Camarasa, Carole; Legras, Jean-Luc; Dequin, Sylvie, 2018, "QTL mapping of modeled metabolic fluxes reveals gene variants impacting yeast central carbon metabolism", https://doi.org/10.15454/C1F8MO, Portail Data INRAE, V1, UNF:6:1GNQbdUMJsdTEnbedU3lUQ== [fileUNF]
The yeast Saccharomyces cerevisiae is an attractive industrial host for the production of a wide range of bulk and fine chemicals, such as biofuels, flavors and fragrances or pharmaceutical products. The intermediates of yeast central carbon metabolism (CCM) are the building bloc...
Sep 26, 2018
Deborde, Catherine; Fontaine, Jean-Xavier; Molinié, Roland; Botana, Adolfo; Jacob, Daniel, 2018, "1D 1H-NMR profiling of wheat samples", https://doi.org/10.15454/ERCVZR, Portail Data INRAE, V1
NMR metabolomic profiling of wheat samples recorded on three sites (JEOL400, Bruker 500 and Bruker 600 MHz) - To be used with NMRProcFlow (https://nmrprocflow.org)
Oct 4, 2018 - URGI Plant and Fungi Dataverse
Quesneville, Hadi, 2018, "Transposable element annotation of Arabidopsis lyrata subsp. lyrata", https://doi.org/10.15454/INYUVZ, Portail Data INRAE, V1
After running the TEdenovo, we got a filtered library (without the SSR consensus and without the unclassified consensus if they were generated with less than 10 HSPs). We have clustered this library and the cluster number is in the header of each consensus. After a first TEannot...
Oct 19, 2018 - URGI Plant and Fungi Dataverse
URGI, 2018, "Transposable element annotation of Botrytis cinerea B05.10", https://doi.org/10.15454/TFYH9N, Portail Data INRAE, V1
The TEdenovo was launched on Botrytis cinerea strain B05.10 whole genome (18 chromosomes, NCBI bioProject PRJNA264284, assembly ASM83294v1). The TE Consensus library from the TEdenovo (36 consensus) was filtered out for consensus sequences classified as SSR, or noCat built from l...
SelGen(www.inra.fr)
Oct 24, 2018
Genotyping, GWAS and genomic selection data Données génotypage, GWAS et sélection génomique
ThaliaDB maize Dataverse(INRA - Institut National de la Recherche Agronomique)
Oct 24, 2018SelGen
This dataverse contains genotyping datasets and files (raw/imputed/nonimputed/filtered/elaborate) and phenotyping datasets (elaborate) useful for diversity analysis, GWAS, Genomics selection, for maize species, obtained in multiple collaborative projects leaded/in partnership by/...
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