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TIFF Image - 2.1 MB - MD5: 57d8bc07c7327c18c26e9c268f7ab53d
original result picture of the positive control (actin-encoding gene (Minc3s00960g19311)) from the PCR experiment (morelos isolate).
TIFF Image - 2.1 MB - MD5: bb73b1a6ae32f2deec4af523faccd624
original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00026' in 12 isolates of M. incognita.
TIFF Image - 2.1 MB - MD5: 04a7eaae5de46d1e9746ac70b19f5b92
original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00450' in 12 isolates of M. incognita.
TIFF Image - 2.1 MB - MD5: 38102ec9205c7043b0fe4ffc47b1e468
original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00751' in 12 isolates of M. incognita.
TIFF Image - 2.1 MB - MD5: 385a3c1fcbee6ab8d5b7d046e40fa41e
original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00909' in 12 isolates of M. incognita.
TIFF Image - 2.1 MB - MD5: 5415ea76dee8e54398a07e54e23091b0
original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s01138' in 12 isolates of M. incognita.
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the C. elegans genome", https://doi.org/10.15454/LQCIW0, Portail Data INRAE, V1
Summary: contains all the essential files produced during the TE prediction, annotation, and post-processing in the C. elegans genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET configur...
Unknown - 771.1 KB - MD5: be1891e0f925554dfda7ab6f2582a84c
Cleaned TE-consensus sequences library (REPET analysis : TEannot + automated cleaning with 1 loose round of TEannot). Used for TE annotation.
Unknown - 5.2 MB - MD5: 3a6ecd1749e832475af20e4fb5fe377a
draft TE annotation (REPET output; gff3 format)
PLINK Binary - 273.1 KB - MD5: 55537462d13a7b63478a5c86bacd3c85
C.elegans canonical TE annotation file. Extracted from the draft TE annotation (bed format) using REPETpostAnal- V1.0.5.py
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