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Feb 18, 2020
Vacher, Corinne, 2020, "R scripts used to infer microbial networks from metabarcoding data and validate them using text-mining", https://doi.org/10.15454/5WD6P6, Portail Data INRAE, V1, UNF:6:LNjhKptvEnA9T2eqRWfBNQ== [fileUNF]
R scripts and datafiles used to infer microbial association networks from metabarcoding data of grapevine foliar samples infected or not by powdery mildew (Erysiphe necator). R script used to search for microbial associations in the Scopus database.
Feb 18, 2020
Vacher, Corinne, 2020, "Bioinformatic scripts used to analyze fungal metabarcoding data obtained from Vitis vinifera leaves", https://doi.org/10.15454/WLHBP6, Portail Data INRAE, V1, UNF:6:LYk3rj9ck7B/6LlcF6oIcQ== [fileUNF]
Bioinformatic scripts used to sort, filter and analyze fungal raw sequence data obtained by metabarcoding foliar, bark and ground cover samples collected in an untreated vineyard at INRA Villenave d'Ornon (France). Amplicon sequence variant (ASV) tables obtained for vine leaves a...
Sep 17, 2019 - EPGV
Toda, Nicholas, 2019, "NLGenomeSweeper", https://doi.org/10.15454/DS6VIK, Portail Data INRAE, V1
NLGenomeSweeper is a command line bash pipeline that searches a genome for NBS-LRR (NLR) disease resistance genes based on the presence of the NB-ARC domain using the consensus sequence of the Pfam HMM profile (PF00931) and class specific consensus sequences built from Vitis vini...
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