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text/x-r-markdown - 11.9 KB - MD5: 236dfebefc66360f002ab9f2be41c81a
bidule
Plain Text - 42.4 KB - MD5: 5454e03b83348b10825a16f245e3b049
Per-TE-consensus statistics e.g number of copies, TE class and order, copies length/identity statistics, etc. Tab separated file.
Plain Text - 431.5 KB - MD5: 7c3b2bb25f672aaded0f0d3779368050
Per-TE-copy statistics e.g linked TE-consenus, copies length/identity statistics, etc. Tab separated file.
Plain Text - 11.2 KB - MD5: 226b7da76ef131548400c2156720d4b5
Logs from C. elegans TE annotation post-processing using REPETpostAnal program. Summarize annotations statistics for each post-processing steps.
text/x-python - 29.5 KB - MD5: a7a5d1e82e1ba7c3f5730ebd8ce5ea7a
In-house python (>= 3) script. Used to parse REPET draft annotation (repeatome) and isolate canonical TE annotations.Requires as input i) REPET draft TE-annotation output (.gff3), ii) the TE-consensus library used for the annotation, iii) the genome fasta file. Default parameters...
Plain Text - 11.2 KB - MD5: 7f420c02b5e039d16790c59e74f07dec
Logs from M. incognita TE annotation post-processing. Summarize annotations statistics for each post-processing steps.
text/x-python - 29.5 KB - MD5: a7a5d1e82e1ba7c3f5730ebd8ce5ea7a
In-house python (>= 3) script. Used to parse REPET draft annotation (repeatome) and isolate canonical TE annotations.Requires as input i) REPET draft TE-annotation output (.gff3), ii) the TE-consensus library used for the annotation, iii) the genome fasta file. Default parameters...
Plain Text - 2.3 KB - MD5: c9791f9de1d0b62d728b652c3a4a74bc
used parameters with MSDial v3.66
Plain Text - 2.5 MB - MD5: b7523fc0b0d96722c075234f3afac122
log10(FPKM+1) value per life stage (median of 3 replicates)
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