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1 to 10 of 17 Results
May 25, 2020 - Portail Data INRAE
Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, David; Pfannkuchen, Martin; Trobajo, Rosa; Vasselon, Valentin; Wetzel, Carlos; Zimmermann, Jonas; Bouchez, Agnès, 2018, "Diat.barcode, an open-access barcode library for diatoms", https://doi.org/10.15454/TOMBYZ, Portail Data INRAE, V7
Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They display a huge diversity, which makes them excellent ecological indicators of aquatic ecosystems, and...
Feb 17, 2020 - Data-OLA Dataverse
Monet, Ghislaine; Barbet,Denis, 2020, "Metadata of OLA-IS : information system of the lakes observatory.", https://doi.org/10.15454/5QERF6, Portail Data INRAE, V1
The IS-OLA user will find here some informations on the sites studied (geographic coordinates), the names of the variables and units, pictures of some lakes and other general information.
Feb 4, 2020 - Data-OLA Dataverse
Monet Ghislaine; Barbet Denis; Schellenberger Antoine; Enrico Guillaume; Anache Cédric, 2020, "OLA's Database Datatypes modeling diagrams", https://doi.org/10.15454/OHXVJY, Portail Data INRAE, V1
The OLA database contains data collected on 4 peri-alpine lakes (Lakes Aiguebelette, Annecy, Bourget, Geneva/Léman) and 24 high-altitude lakes of the northen French Alps and Pyrenees mountains. The OLA database was designed according to a relational model. Each type of data is mo...
Jan 31, 2020 - Data-OLA Dataverse
Monet, Ghislaine; Barbet, Denis, 2020, "Terms of Use of OLA-IS (Observatory of LAkes - Information System", https://doi.org/10.15454/HHN2GA, Portail Data INRAE, V1
This text, in English, followed by its French version describes the terms of use of the data available in the information system of the lakes observator. The Terms of Use herein apply 1) to the use of data from the Lakes Observatory (OLA) produced and managed by INRAE (laboratory...
Jul 19, 2019
Rimet, Frederic; Bouchez, Agnès, 2019, "Life-forms, cell-sizes and ecological guilds of diatoms in European rivers", https://doi.org/10.15454/XLQ40G, Portail Data Inra, V1
Diatoms are a very diverse group of microalgae that encompass about 100 000 taxa. This makes an excellent bioindicator especially of rivers. The majority of biotic indices based on diatoms are constructed on species pollution-sensitivities. Nevertheless, recent studies showed the...
Mar 5, 2019
Rimet, Frederic, 2019, "Factors influencing the heterogeneity of benthic diatom communities inside natural alpine lakes - Supplementary data", https://doi.org/10.15454/ZTTQGQ, Portail Data Inra, V2
This .xlsx file gives the raw data used for the analyses of the paper entitled "Factors influencing the heterogeneity of benthic diatom communities inside natural alpine lakes" - Physical Chemical data: lake names, name of the mountain range, geographical coordinates, chemical me...
Mar 5, 2019
Keck, François; Rimet, Frédéric; Vasselon, Valentin; Bouchez, Agnès, 2019, "A ready-to-use database for DADA2: Diat.barcode_rbcL_312bp_DADA2", https://doi.org/10.15454/HNI1EK, Portail Data Inra, V1
This database is an adaptation for DADA2 of : Vasselon, Valentin; Rimet, Frederic; Bouchez, Agnès, 2018, "Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcoding (version v7: 23-02-2018)", https://doi.org/10.15454/HYRVUH, Portail Data Inra, V1 This versio...
Feb 18, 2019 - Data-OLA Dataverse
Anneville, Orlane; Dur, Gaël; RImet, Frédéric; Souissi, Sami, 2019, "Biomass of phytoplankton assemblages in Lake Geneva 1974-2010", https://doi.org/10.15454/AOATKG, Portail Data Inra, V1, UNF:6:toPn3TSq5TTWe5igE2VT6Q== [fileUNF]
Sampling has been continuously undertaken in the middle of the lake at the deepest point, once or twice a month. The studied environmental factors used in this study were selected based on previous analyses that emphasized their role on phytoplankton abundance: phosphorus concent...
Feb 11, 2019 - Data-OLA Dataverse
Schellenberger, Antoine; Monet, Ghislaine; Barbet, Denis; Maurice, Damien; Enrico, Guillaume; Fiocca, Amélie, 2019, "Software Architecture of the OLA Observatory Information System for Lake Environmental Research", https://doi.org/10.15454/VBWYWG, Portail Data Inra, V2
OLA Information system (©SOERE OLA-IS, AnaEE-France, INRA Thonon-les-Bains, developed by Eco-Informatics ORE INRA Team) has been developed to meet data management needs of lake environmental research observatories in order to make data available for scientific communities. Softwa...
Dec 4, 2018 - Portail Data INRAE
Rivera, Sinziana; Vasselon, Valentin; Chardon, Cécile; Guéguen, Julie; Bouchez, Agnès; Rimet, Frédéric, 2018, "Bioindication diatomées : comparaison microscopie / barcoding ADN. Données brutes Fastq 2016 + 2017, Test des différentes stratégies bioinfo sur données 2016. Projet AFB numéro 15000239 / A30.", https://doi.org/10.15454/9EG5Z4, Portail Data INRAE, V1, UNF:6:ajEMExtsrc4xeT8GdJzfgQ== [fileUNF]
Fichiers fastq rassemble tous les fichier fastq des échantillons de 2016 et 2017 Ils sont numérotés de 1.fastq à 464.fastq La correspondance avec les échantillons est donné dans le fichier Suivi_Mothur_Run_Dreal_2016_2017.xlsx Test des différentes stratégies bioinfo - data 2016.z...
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