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Biogeco Dataverse (INRA - Institut National de la Recherche Agronomique -
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BIOGECO ( BIOdiversité, GEnes & COmmunautés) est une Unité Mixte de Recherche (UMR) de l’INRA et de l’université de Bordeaux. L’unité comprend des spécialistes de l’écologie, de la génétique des populations, quantitative et évolutive. Les activités de recherche menées par BIOGECO visent à élucider les mécanismes qui façonnent la diversité biologique dans les écosystèmes terrestres à différents niveaux hiérarchiques : communautés, espèces, populations, gènes. Les interactions entre les espèces, les populations et les individus sont donc considérés comme les principaux moteurs de la diversité.

BIOGECO ( BIOdiversity, GEnes & COmmunities) is a Joint Research Unit (UMR) of INRA and the University of Bordeaux. The unit includes specialists in ecology, population genetics, quantitative and evolutionary. The research activities conducted by BIOGECO to elucidate the mechanisms that shape biological diversity in terrestrial ecosystems at different hierarchical levels: communities, species, populations, genes. Interactions between species, populations and individuals are taken into account as the main drivers of diversity.
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1 to 9 of 9 Results
Apr 10, 2020 - Portail Data INRAE
Ehrenmann, Francois; Truffaut, Laura; Kremer, Antoine, 2020, "Oak Genome Sequencing Website",, Portail Data INRAE, V1
The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource by INRAE, available at It provides access to various resources : oak genome b...
Apr 8, 2020
Bert, Didier; Lebourgeois, François; Ponton, Stéphane; Musch, Brigitte; Ducousso, Alexis, 2020, "Growth data for 26 provenances of Quercus petraea and Q robur at three common gardens in France",, Portail Data INRAE, V1, UNF:6:Ep3GgBi9KkZP2og4DL2brA== [fileUNF]
The dataset is composed of 5 columns and 1140 lines: “Garden” is the code for the common garden: 1 is for “Petite Charnie” (western France), 2 for “Vincence” (center of France) and 3 for “Sillegny” (north-eastern France) “Code” is the code number of the oak provenance “Provenance...
Mar 24, 2020
Dutech, Cyril; Feau, Nicolas; Lesur, Isabelle; Ehrenmann, François; Letellier, Thomas; Li, Bayo; Mouden, Charlotte; Guichoux, Erwan; Desprez-Loustau, Marie-Laure; Gross, Andrin, 2020, "An easy and robust method for isolation and validation of single nucleotide polymorphic markers from the Erysiphe alphitoides, the oak powdery mildew, draft genome",, Portail Data INRAE, V2
This dataset includes the sequence and SNP data, and the scripts for detecting SNP from targeted sequences isolated from the Erysipe alphitoides draft genome. The draft genome sequencing used the SRR10956459 short reads (Bioproject: PRJNA593204). Assembly and Annotation of the dr...
Feb 18, 2020 - Omics Dataverse
Vacher, Corinne, 2020, "R scripts used to infer microbial networks from metabarcoding data and validate them using text-mining",, Portail Data INRAE, V1, UNF:6:LNjhKptvEnA9T2eqRWfBNQ== [fileUNF]
R scripts and datafiles used to infer microbial association networks from metabarcoding data of grapevine foliar samples infected or not by powdery mildew (Erysiphe necator). R script used to search for microbial associations in the Scopus database.
Feb 10, 2020
Ehrenmann, Francois; Kremer, Antoine; Truffaut, Laura, 2020, "TREEPEACE project website",, Portail Data INRAE, V1
TREEPEACE project website There are widespread concerns that trees, due to their long life-span, are not able to cope with the rapid ongoing climate change. While many studies have so far investigated potential impacts of climate change on forests, much less attention has been gi...
Sep 26, 2019 - Portail Data INRAE
Bonal, Raúl; Guichoux, Erwan; Delcamp, Adline; Laizet, Yec'han; Hampe, Arndt, 2019, "70 highly validated SNP markers for Quercus ilex",, Portail Data INRAE, V1
70 highly validated SNP markers for Quercus ilex developped from ddRAD-Seq data following Garcia et al., 2018. PCR primer sequences and single base extension primers for MassArray analysis are provided.
Jun 28, 2019 - Portail Data INRAE
Fort, Tania; Pauvert, Charlie; Zanne, Amy E.; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2019, "Bioinformatic and statistical scripts to analyze acorn mycobiota structure and composition",, Portail Data INRAE, V1, UNF:6:TFUhrxuDLdy+rmsmGam2Yg== [fileUNF]
This dataset contains R-scripts to perform bioinformatic and statistical analysis on acorn associated fungal communities (Fort et al., Maternal effects and environmental filtering shape seed fungal communities in oak trees. Submitted). Bioinformatic script was applied to raw sequ...
Oct 1, 2018
Caignard, Thomas; Kremer, Antoine, 2018, "TREEPEACE: Heritability and genetic architecture of reproduction-related traits in a temperate oak species",, Portail Data Inra, V1, UNF:6:jSMwkS9b86gQdDfMCdgKsA== [fileUNF]
The dataset contains data characterizing the reproduction of 342 trees monitored during four years, from 2014 to 2017, within a full-sib family of pedunculated oak (Quercus robur) situated at the experimental unit of Bourran, France. Trees were planted within a randomized incompl...
Apr 13, 2018
Lesur Kupin, Isabelle, 2018, "TREEPEACE: Development of target sequence capture and estimation of genomic relatedness in a mixed oak stand",, Portail Data Inra, V1
Le jeu de données est constitué de 191,281 SNPs identifiés dans 297 arbres (mélange de Q. robur et Q. petraea) situés dans la forêt de La Petite Charnie. Ces SNPs ont été détectés sur le génome de référence du chêne 3P, obtenu dans le cadre du projet ANR Genoak et hébergé par l'U...
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