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PPN-specific genes in M. incognita
Identification of genes specific to plant-parasitic nematodes (PPN) in the genome of the root-knot nematode Meloidogyne incognita.
The identification is based on an orthofinder analysis of 63 species (61 nematodes + 2 tardigrades). Specificity to PPN is verified by a Diamond similarity search against the NCBI's nr library.
The identified genes are then annotated and filtered according to various different criteria.
This dataverse gathers all the intermediate results and further annotations.
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Jul 3, 2020
Danchin, Etienne; Da Rocha, Martine, 2020, "M. incognita protein-coding genes expression patterns", https://doi.org/10.15454/YM2DHE, Portail Data INRAE, V1
M. incognita protein-coding genes expression values across 4 life stages in triplicates. Life stages are as follows: - W: eggs - J2: pre-parasitic infective juveniles - J3: infective juveniles (mic of late J2, J3 and J4) - Fem: adult female Two tables are given, one with the raw...
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